Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
95
ChIP-seq
17
ATAC-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
95
DNA binding
Target of assay
43
histone
43
histone modification
35
control
28
broad histone mark
17
transcription factor
15
narrow histone mark
Date released
73
August, 2017
18
October, 2018
3
June, 2019
1
October, 2019
Available data
102
bam
90
fastq
75
bigWig
bed narrowPeak
22
tagAlign
15
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
Organism
95
Homo sapiens
Biosample type
67
tissue
25
in vitro differentiated cells
3
primary cell
Organ
139
liver
95
connective tissue
78
pancreas
66
adipose tissue
48
brain
32
epithelium
27
vasculature
26
blood vessel
20
heart
18
limb
13
kidney
12
musculature of body
11
nerve
9
artery
8
embryo
8
spleen
7
vein
6
blood
6
bodily fluid
4
gonad
4
ovary
3
eye
1
lymph node
Project
95
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
95
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
17
missing controlled_by
organ_slims!
pituitary gland
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
95 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
35
white adipose tissue
12
subcutaneous adipose tissue
10
omental fat pad
8
adipose tissue
1
+ See 1 more…
in vitro differentiated cells
adipocyte
25
primary cell
cardiac fibroblast
2
mesenchymal stem cell
1
See all biosamples
Download