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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
ATAC-seq
1
pCHi-C
Assay category
55
DNA binding
5
DNA accessibility
5
Transcription
DNA methylation
Target of assay
30
histone
30
histone modification
20
broad histone mark
19
control
10
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
42
October, 2019
7
December, 2018
7
January, 2019
7
November, 2018
1
February, 2020
1
March, 2020
1
October, 2017
Available data
64
bam
45
bigWig
41
bed narrowPeak
39
bigBed narrowPeak
22
fastq
6
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
Organism
66
Homo sapiens
Biosample type
66
tissue
Organ
893
pancreas
784
liver
677
connective tissue
485
adipose tissue
471
epithelium
383
heart
350
kidney
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
66
AMP-T2D consortium
organ_slims!
pituitary gland
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
tibial nerve
35
5
2
1
spleen
20
1
1
1
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