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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
136
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
histone modification
44
broad histone mark
44
narrow histone mark
Date released
101
May, 2022
33
February, 2021
18
February, 2023
17
May, 2021
16
January, 2021
10
April, 2020
7
August, 2020
3
October, 2022
3
September, 2020
1
March, 2023
Available data
101
zippedFastqFolder
43
fastq
10
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
208
Homo sapiens
Biosample type
172
primary cell
32
tissue
5
cell line
Organ
120
pancreas
99
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
147
HPAP
51
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
11
GRCh38
3
hg19
Lab
147
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
organ_slims!
pituitary gland
target.investigated_as!
histone modification
award.project!
AMP
assay_slims!
Transcription
BIOSAMPLE
ASSAY
209 results
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snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
pancreatic alpha cell
29
31
1
Langerhans cell
48
pancreatic beta cell
16
16
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
+ See 16 more…
tissue
islet of Langerhans
6
11
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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