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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
20
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
27
DNA methylation
20
DNA binding
8
3D chromatin structure
8
DNA accessibility
Target of assay
60
histone
histone modification
37
broad histone mark
23
narrow histone mark
17
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
117
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
102
bam
90
bigWig
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
12
bed narrowPeak
7
bigBed narrowPeak
4
bed bed3+
4
hdf5
Organism
128
Homo sapiens
Biosample type
97
tissue
31
primary cell
Organ
40
heart
18
brain
18
connective tissue
16
kidney
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
128
AMP
Genome assembly (visualization)
96
hg19
84
GRCh38
Lab
128
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
pituitary gland
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
128 results
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total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
11
1
4
2
kidney
5
1
1
heart
2
2
1
1
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 26 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 20 more…
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