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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
812
ChIP-seq
259
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
812
DNA binding
469
DNA accessibility
38
DNA methylation
3D chromatin structure
Target of assay
627
histone modification
626
histone
323
narrow histone mark
303
broad histone mark
187
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
261
August, 2017
239
October, 2019
227
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
82
November, 2017
74
April, 2019
73
July, 2019
66
May, 2022
59
October, 2018
47
September, 2023
40
May, 2021
39
November, 2019
35
May, 2024
33
March, 2020
25
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
17
December, 2017
15
May, 2023
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
4
December, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1817
bam
1678
bigWig
1076
tsv
908
bed narrowPeak
496
bigBed narrowPeak
298
fastq
237
tagAlign
213
bed broadPeak
192
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2656
Homo sapiens
Biosample type
2665
tissue
1068
primary cell
341
in vitro differentiated cells
297
cell line
10
stem cell
Organ
530
connective tissue
484
pancreas
471
adipose tissue
321
liver
298
heart
297
kidney
265
brain
158
bone element
129
blood vessel
129
vasculature
118
limb
76
musculature of body
72
artery
56
eye
43
nerve
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2568
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1765
GRCh38
1655
hg19
Lab
2321
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
pituitary gland
target.investigated_as!
transcription factor
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
2665 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
64
67
1
7
4
1
1
4
adipose tissue
382
2
3
3
1
liver
167
108
20
2
1
3
1
1
1
kidney
49
26
75
13
64
6
1
1
bone element
84
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