Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
28
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
28
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
678
February, 2021
358
May, 2021
341
May, 2020
335
August, 2017
302
August, 2021
270
October, 2019
196
June, 2019
158
November, 2017
153
February, 2023
135
July, 2018
120
May, 2022
111
May, 2019
95
July, 2019
74
April, 2019
59
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2017
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2019
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
7
December, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
92
bed narrowPeak
64
xls
57
txt
45
bam
33
bigWig
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
301
Homo sapiens
Biosample type
229
tissue
42
in vitro differentiated cells
31
cell line
Organ
130
kidney
92
heart
24
liver
8
embryo
6
blood vessel
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
302
AMP
Genome assembly (visualization)
102
GRCh38
46
hg19
Lab
145
AMP-T2D consortium
128
Katalin Susztak, Upenn
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
pituitary gland
epithelium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
302 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
7
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
See all biosamples
Download