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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
21
ATAC-seq
18
ChIP-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
30
Transcription
21
DNA accessibility
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
40
May, 2022
36
August, 2021
2
March, 2019
Available data
34
bed narrowPeak
34
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
78
Homo sapiens
Biosample type
44
tissue
34
cell line
Organ
71
liver
4
pancreas
2
kidney
Project
78
AMP
Genome assembly (visualization)
37
hg19
1
GRCh38
Lab
3856
AMP-T2D consortium
326
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
organ_slims!
skeleton
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
78 results
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total RNA-seq
ATAC-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver
20
20
islet of Langerhans
1
1
2
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
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