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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
66
DNA binding
38
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
108
bam
91
bigWig
86
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
116
Homo sapiens
Biosample type
116
tissue
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
lung
18
ureter
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
116
AMP
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
116
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
skeleton
lung
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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