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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
40
DNase-seq
30
ATAC-seq
26
total RNA-seq
4
Hi-C
pCHi-C
1
RRBS
1
WGBS
Assay category
71
DNA binding
70
DNA accessibility
26
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
52
histone
52
histone modification
34
broad histone mark
18
control
18
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
39
June, 2019
31
February, 2023
7
May, 2019
6
July, 2019
4
February, 2020
Available data
119
bed narrowPeak
115
bam
97
bigWig
90
bigBed narrowPeak
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
173
Homo sapiens
Biosample type
168
tissue
5
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
173
AMP
Genome assembly (visualization)
124
hg19
96
GRCh38
Lab
173
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
skeleton
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
retina
3
15
3
islet of Langerhans
3
1
14
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primary cell
retinal pigment epithelial cell
3
1
1
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