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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ATAC-seq
13
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
89
DNA accessibility
14
Transcription
Date released
659
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
109
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
65
bed narrowPeak
6
bed bed3
4
bed bed3+
4
tsv
3
bed bedgraph
3
bigWig
3
txt
Organism
108
Homo sapiens
Biosample type
primary cell
87
tissue
16
in vitro differentiated cells
6
cell line
Organ
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
19
pancreas
15
epithelium
14
connective tissue
8
bone element
skeleton
1
adipose tissue
1
brain
Project
86
AMP
23
T1D
Genome assembly (visualization)
41
hg19
35
GRCh38
Lab
83
AMP-T2D consortium
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
organ_slims!
skeleton
biosample_type!
primary cell
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
adipose tissue
1
+ See 2 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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