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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ATAC-seq
Assay category
15
DNA accessibility
Date released
9
February, 2023
6
February, 2021
Available data
3384
bam
3169
bigWig
1809
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
157
txt
153
zippedFastqFolder
64
xls
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
12
in vitro differentiated cells
1
cell line
1
primary cell
1
tissue
Organ
10
connective tissue
4
bone element
skeleton
1
brain
1
liver
Project
15
AMP
Genome assembly (visualization)
15
hg19
2
GRCh38
Lab
12
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
organ_slims!
skeleton
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
15 results
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ATAC-seq
in vitro differentiated cells
chondrocyte
5
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
primary cell
osteoblast
1
tissue
brain
1
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