Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
Transcription
41
DNA accessibility
6
DNA methylation
Date released
328
November, 2017
237
August, 2017
235
October, 2019
218
June, 2019
140
May, 2022
136
February, 2021
127
May, 2021
120
May, 2019
115
August, 2021
107
February, 2023
101
May, 2020
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
84
txt
33
fastq
19
bam
15
bed narrowPeak
9
tsv
tagAlign
6
bigWig
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
136
Homo sapiens
Biosample type
87
tissue
35
primary cell
10
cell line
4
in vitro differentiated cells
Organ
92
bone element
8
artery
8
blood vessel
8
heart
skeleton
8
vasculature
6
connective tissue
6
epithelium
6
limb
6
pancreas
3
kidney
2
liver
Project
103
AMP
33
HPAP
Genome assembly (visualization)
16
hg19
10
GRCh38
Lab
103
AMP-T2D consortium
33
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
organ_slims!
skeleton
files.file_type!
tagAlign
assay_slims!
Transcription
BIOSAMPLE
ASSAY
136 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
1
in vitro differentiated cells
adipocyte
4
Download