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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
68
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
May, 2022
1
October, 2022
Available data
3384
bam
3124
bigWig
1765
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
154
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
153
Homo sapiens
Biosample type
153
tissue
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
skeleton
1
musculature of body
Project
154
AMP
Genome assembly (visualization)
1
hg19
Lab
91
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
6
audit script error
organ_slims!
skeleton
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
154 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
skeletal muscle tissue
1
cell line
MIN6
1
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