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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
31
ChIP-seq
4
Hi-C
2
total RNA-seq
1
ATAC-seq
1
WGBS
Assay category
35
DNA accessibility
31
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
25
histone
25
histone modification
18
broad histone mark
7
narrow histone mark
6
control
Date released
32
June, 2019
27
October, 2019
7
May, 2019
5
July, 2019
2
February, 2020
Available data
66
bam
60
bigWig
59
bed narrowPeak
58
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
73
Homo sapiens
Biosample type
73
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
59
GRCh38
59
hg19
Lab
73
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
skeleton
nerve
assay_title!
MPRA
BIOSAMPLE
ASSAY
73 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
ATAC-seq
WGBS
tissue
tibial artery
2
23
1
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
forelimb muscle
1
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