Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
ChIP-seq
25
ATAC-seq
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
481
Transcription
25
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Date released
455
February, 2021
18
July, 2019
14
February, 2023
7
August, 2017
5
August, 2021
5
November, 2020
3
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
Available data
486
bigWig
482
bam
478
tsv
9
fastq
8
bed bed3+
8
bed narrowPeak
6
bed bed3
4
bed bedgraph
4
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
521
Homo sapiens
Biosample type
471
tissue
29
in vitro differentiated cells
21
primary cell
1
stem cell
Organ
720
pancreas
522
connective tissue
416
adipose tissue
376
epithelium
233
liver
229
heart
221
kidney
159
bone element
123
vasculature
122
blood vessel
103
artery
52
eye
36
brain
24
musculature of body
20
limb
20
lung
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
521
AMP
1
T1D
Genome assembly (visualization)
505
hg19
482
GRCh38
Lab
517
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
organ_slims!
skeleton
assay_title!
DNase-seq
ChIP-seq
BIOSAMPLE
ASSAY
522 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
3
3
1
bone tissue
58
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
subcutaneous abdominal adipose tissue
3
+ See 2 more…
in vitro differentiated cells
adipocyte
5
8
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
osteoblast
5
2
1
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
adult endothelial progenitor cell
1
brain pericyte
1
+ See 5 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download