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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
4
Hi-C
4
total RNA-seq
2
ATAC-seq
1
WGBS
Assay category
66
DNA binding
38
DNA accessibility
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
February, 2020
Available data
108
bam
91
bigWig
86
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
113
Homo sapiens
Biosample type
113
tissue
Organ
945
pancreas
790
liver
682
connective tissue
524
epithelium
489
adipose tissue
354
kidney
350
heart
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
113
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
skeleton
month_released!
February, 2020
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
ATAC-seq
WGBS
tissue
tibial nerve
35
2
4
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
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