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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
80
ChIP-seq
34
ATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
115
Transcription
80
DNA binding
36
DNA accessibility
Target of assay
134
histone
134
histone modification
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
161
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
January, 2021
Available data
160
bam
156
bigWig
96
tsv
68
bed narrowPeak
40
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
253
Homo sapiens
Biosample type
167
primary cell
44
tissue
37
in vitro differentiated cells
5
cell line
Organ
43
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
176
T1D
77
AMP
Genome assembly (visualization)
174
hg19
136
GRCh38
Lab
3490
AMP-T2D consortium
324
Klaus Kaestner, Upenn
253
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
organ_slims!
skeleton
target.investigated_as!
broad histone mark
month_released!
January, 2021
BIOSAMPLE
ASSAY
253 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
monocyte
53
40
1
CD8-positive, alpha-beta T cell
4
13
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
11
29
2
pancreas
1
thymus
1
in vitro differentiated cells
embryonic stem cell
5
27
5
cell line
EndoC_BH1
3
2
See all biosamples
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