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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
189
total RNA-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
510
DNA binding
193
Transcription
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
194
May, 2020
53
December, 2017
50
November, 2018
33
August, 2017
33
August, 2021
20
May, 2022
10
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
3
October, 2019
2
February, 2021
1
December, 2018
1
February, 2020
Available data
644
bam
566
bigWig
436
fastq
384
bed narrowPeak
331
bigBed narrowPeak
174
tsv
68
tagAlign
50
bed broadPeak
50
bigBed broadPeak
7
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
720
Homo sapiens
Biosample type
391
cell line
311
tissue
10
primary cell
8
in vitro differentiated cells
Organ
720
liver
695
pancreas
606
connective tissue
463
adipose tissue
357
epithelium
259
heart
179
brain
176
kidney
147
bone element
133
vasculature
129
blood vessel
78
artery
60
blood
60
bodily fluid
44
limb
41
musculature of body
33
embryo
29
eye
24
nerve
19
spleen
10
lung
10
vein
5
gonad
5
ovary
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
720
AMP
Genome assembly (visualization)
567
hg19
495
GRCh38
Lab
670
AMP-T2D consortium
30
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
organ_slims!
skeleton
target.investigated_as!
broad histone mark
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
720 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
14
1
2
2
2
1
tissue
liver
123
167
3
1
1
1
1
1
right lobe of liver
7
3
1
2
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
8
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