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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
67
total RNA-seq
64
ATAC-seq
22
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
70
DNA accessibility
67
Transcription
22
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
671
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
305
October, 2019
267
May, 2021
218
June, 2019
188
February, 2023
171
August, 2021
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
56
March, 2020
56
November, 2019
51
December, 2017
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
7
August, 2020
7
December, 2019
6
April, 2018
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
1
August, 2022
Available data
81
bed narrowPeak
64
xls
49
txt
25
bigWig
18
tsv
12
bam
4
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
170
Homo sapiens
Biosample type
123
tissue
44
cell line
in vitro differentiated cells
4
primary cell
Organ
122
kidney
35
liver
8
embryo
6
epithelium
4
pancreas
1
adipose tissue
1
connective tissue
Project
171
AMP
Genome assembly (visualization)
75
GRCh38
27
hg19
Lab
120
Katalin Susztak, Upenn
36
Bing Ren, UCSD
15
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
skin of body
biosample_type!
in vitro differentiated cells
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
171 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
64
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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