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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
37
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
37
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
histone modification
24
control
20
broad histone mark
13
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
23
October, 2018
21
August, 2017
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
441
bam
423
bigWig
401
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
452
Homo sapiens
Biosample type
450
tissue
2
primary cell
1
in vitro differentiated cells
Organ
778
pancreas
678
liver
579
connective tissue
453
adipose tissue
413
epithelium
266
heart
246
kidney
159
bone element
152
vasculature
149
blood vessel
117
artery
68
blood
68
bodily fluid
64
brain
54
eye
37
limb
29
musculature of body
24
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
453
AMP
Genome assembly (visualization)
418
hg19
417
GRCh38
Lab
453
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
8
missing controlled_by
organ_slims!
skin of body
files.file_type!
bed bed3+
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
453 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
subcutaneous abdominal adipose tissue
5
3
white adipose tissue
8
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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