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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ATAC-seq
164
ChIP-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA accessibility
184
Transcription
164
DNA binding
52
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
102
May, 2021
76
February, 2023
59
September, 2020
44
June, 2019
41
February, 2021
37
August, 2017
32
September, 2018
23
October, 2019
13
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
4
May, 2019
3
October, 2022
2
August, 2021
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
506
bam
501
bigWig
369
fastq
tsv
191
bed narrowPeak
153
zippedFastqFolder
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
703
Homo sapiens
Biosample type
1376
tissue
703
primary cell
524
cell line
208
in vitro differentiated cells
5
stem cell
Organ
255
epithelium
207
pancreas
27
vasculature
25
kidney
22
blood vessel
20
connective tissue
16
vein
15
brain
8
blood
8
bodily fluid
8
musculature of body
7
heart
7
liver
4
eye
1
bone element
1
bone marrow
Project
318
HPAP
316
AMP
68
T1D
1
ITG
Genome assembly (visualization)
264
hg19
182
GRCh38
Lab
318
Klaus Kaestner, Upenn
291
AMP-T2D consortium
93
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
28
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
skin of body
files.file_type!
tsv
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
703 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
9
42
25
1
monocyte
15
44
1
1
1
pancreatic beta cell
23
9
11
16
1
exocrine cell
39
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