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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
312
ChIP-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
50
ATAC-seq
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
MeRIP-seq
1
DNase-seq
Assay category
312
DNA binding
177
Transcription
79
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
187
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
129
August, 2017
85
February, 2021
82
October, 2019
66
August, 2021
47
September, 2023
29
October, 2018
28
February, 2023
28
May, 2022
24
November, 2017
23
July, 2019
23
May, 2020
22
May, 2019
19
April, 2020
15
April, 2019
15
May, 2023
12
December, 2017
11
October, 2017
10
March, 2020
9
November, 2018
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
1
January, 2019
1
November, 2019
Available data
1907
bam
1772
bigWig
tsv
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
713
Homo sapiens
Biosample type
716
tissue
523
primary cell
139
cell line
131
in vitro differentiated cells
4
stem cell
Organ
134
kidney
107
pancreas
94
liver
92
bone element
77
connective tissue
76
adipose tissue
50
brain
29
heart
24
musculature of body
23
limb
21
eye
19
blood vessel
19
lung
19
vasculature
11
nerve
10
spleen
8
skeleton
7
artery
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
skin of body
1
thymus
Project
621
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
60
hg19
59
GRCh38
Lab
507
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
84
inconsistent ontology term
2
audit script error
Audit category:
22
missing controlled_by
organ_slims!
skin of body
files.file_type!
tsv
bed narrowPeak
BIOSAMPLE
ASSAY
716 results
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Clear Filters
ChIP-seq
total RNA-seq
RNA microarray
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
MeRIP-seq
DNase-seq
tissue
kidney
7
49
59
11
6
1
1
islet of Langerhans
51
31
29
7
3
1
4
4
liver
63
20
1
3
1
1
bone element
84
subcutaneous abdominal adipose tissue
35
3
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