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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
82
ChIP-seq
27
snATAC-seq
22
ATAC-seq
13
single cell RNA-seq
2
pCHi-C
Assay category
82
DNA binding
49
DNA accessibility
13
Transcription
Target of assay
32
control
30
histone
30
histone modification
20
transcription factor
19
broad histone mark
11
RNA binding protein
11
narrow histone mark
Date released
406
November, 2017
322
August, 2017
297
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
648
bam
598
bigWig
tsv
105
fastq
89
txt
68
bed narrowPeak
45
bigBed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
230
Homo sapiens
Biosample type
167
tissue
41
primary cell
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
51
pancreas
29
connective tissue
23
adipose tissue
14
artery
14
blood vessel
14
heart
14
vasculature
8
skeleton
6
limb
3
liver
Project
191
AMP
39
HPAP
Genome assembly (visualization)
74
hg19
68
GRCh38
Lab
191
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent control read length
organ_slims!
skin of body
files.file_type!
tsv
BIOSAMPLE
ASSAY
230 results
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Clear Filters
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
+ See 10 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
6
8
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
See all biosamples
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