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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
101
ChIP-seq
100
ATAC-seq
1
pCHi-C
Assay category
190
Transcription
101
DNA binding
100
DNA accessibility
Target of assay
36
control
34
histone
34
histone modification
31
transcription factor
30
narrow histone mark
4
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
305
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
334
bam
298
bigWig
189
tsv
65
bed narrowPeak
51
fastq
50
tagAlign
36
bigBed narrowPeak
3
bed bed3+
Organism
392
Homo sapiens
Biosample type
241
tissue
147
primary cell
in vitro differentiated cells
3
stem cell
1
cell line
Organ
242
liver
Project
347
AMP
45
T1D
Genome assembly (visualization)
299
hg19
246
GRCh38
Lab
347
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
8
inconsistent ontology term
Audit category:
2
inconsistent control read length
organ_slims!
skin of body
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
392 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
liver
143
88
right lobe of liver
10
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
stem cell
hESC
3
cell line
HepG2
1
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