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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
11
ChIP-seq
5
pCHi-C
1
RRBS
Assay category
28
DNA accessibility
19
Transcription
11
DNA binding
1
DNA methylation
Target of assay
9
control
2
histone
2
histone modification
2
narrow histone mark
Date released
31
February, 2023
21
October, 2019
4
December, 2018
3
November, 2018
1
February, 2020
1
January, 2019
1
July, 2019
1
June, 2019
1
March, 2020
Available data
47
bed narrowPeak
31
bam
24
fastq
bigWig
19
bigBed narrowPeak
6
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
64
Homo sapiens
Biosample type
62
tissue
2
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
28
hg19
Lab
64
AMP-T2D consortium
organ_slims!
skin of body
files.file_type!
bigWig
BIOSAMPLE
ASSAY
64 results
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ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
spleen
8
1
primary cell
retinal pigment epithelial cell
1
1
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