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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
19
total RNA-seq
16
ChIP-seq
5
DNase-seq
5
pCHi-C
2
WGBS
1
RRBS
Assay category
34
DNA accessibility
19
Transcription
16
DNA binding
3
DNA methylation
Target of assay
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
31
February, 2023
21
October, 2019
6
January, 2019
6
June, 2019
6
November, 2018
3
December, 2018
1
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
47
bed narrowPeak
22
bam
22
bigWig
19
bigBed narrowPeak
16
fastq
6
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
77
Homo sapiens
Biosample type
73
tissue
4
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
48
hg19
22
GRCh38
Lab
77
AMP-T2D consortium
organ_slims!
skin of body
target.investigated_as!
control
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
WGBS
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
spleen
1
12
1
1
2
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
1
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