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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
189
total RNA-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
214
DNA binding
193
Transcription
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
194
May, 2020
74
November, 2017
48
August, 2017
30
December, 2017
24
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
1
November, 2018
Available data
347
bam
263
bigWig
174
tsv
134
fastq
86
tagAlign
84
bed narrowPeak
38
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
6
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
424
Homo sapiens
Biosample type
297
tissue
103
cell line
13
in vitro differentiated cells
11
primary cell
Organ
754
pancreas
610
connective tissue
466
adipose tissue
424
liver
392
epithelium
299
heart
246
brain
181
kidney
169
vasculature
166
blood vessel
147
bone element
87
artery
78
limb
61
musculature of body
40
nerve
34
embryo
28
eye
19
vein
17
spleen
10
lung
9
blood
9
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
424
AMP
Genome assembly (visualization)
268
hg19
237
GRCh38
Lab
384
AMP-T2D consortium
20
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
organ_slims!
skin of body
target.investigated_as!
transcription factor
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
424 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
108
167
3
1
1
1
1
1
right lobe of liver
8
3
1
2
cell line
HepG2
81
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
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