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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
232
DNA binding
114
DNA accessibility
Target of assay
203
histone
203
histone modification
103
narrow histone mark
100
broad histone mark
32
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
56
August, 2017
51
June, 2019
48
July, 2018
43
April, 2018
31
October, 2019
18
July, 2019
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
603
bigWig
599
bam
404
fastq
285
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
599
Homo sapiens
Biosample type
1818
tissue
599
primary cell
254
in vitro differentiated cells
233
cell line
3
stem cell
Organ
237
epithelium
194
pancreas
35
connective tissue
30
vasculature
29
kidney
26
blood vessel
20
vein
14
brain
13
musculature of body
12
liver
11
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
419
AMP
180
T1D
Genome assembly (visualization)
564
hg19
516
GRCh38
Lab
419
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
skin of body
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
599 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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