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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
total RNA-seq
101
ATAC-seq
50
ChIP-seq
10
MeRIP-seq
1
DNase-seq
1
pCHi-C
Assay category
194
Transcription
102
DNA accessibility
50
DNA binding
Target of assay
28
control
27
histone
27
histone modification
27
narrow histone mark
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
289
bam
265
bigWig
193
tsv
50
tagAlign
29
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
357
Homo sapiens
Biosample type
197
tissue
153
primary cell
7
cell line
Organ
194
liver
10
pancreas
6
connective tissue
6
epithelium
Project
312
AMP
45
T1D
Genome assembly (visualization)
266
hg19
213
GRCh38
Lab
302
AMP-T2D consortium
45
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
14
inconsistent ontology term
organ_slims!
small intestine
BIOSAMPLE
ASSAY
357 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
DNase-seq
pCHi-C
tissue
liver
143
50
islet of Langerhans
4
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
osteoblast
4
1
1
B cell
2
2
+ See 25 more…
cell line
EndoC_BH1
6
HepG2
1
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