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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ATAC-seq
6
ChIP-seq
4
MeRIP-seq
4
total RNA-seq
1
DNase-seq
Assay category
7
DNA accessibility
6
DNA binding
4
Transcription
Target of assay
8
control
2
nucleotide modification
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
46
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
17
bam
11
fastq
10
bigWig
7
bed narrowPeak
6
bigBed narrowPeak
4
tsv
3
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
21
Homo sapiens
Biosample type
11
primary cell
10
tissue
Organ
15
pancreas
6
connective tissue
5
epithelium
Project
21
AMP
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
17
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
inconsistent ontology term
organ_slims!
small intestine
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
21 results
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Clear Filters
ATAC-seq
ChIP-seq
MeRIP-seq
total RNA-seq
DNase-seq
primary cell
osteoblast
1
4
1
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic acinar cell
1
tissue
islet of Langerhans
6
4
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