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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
301
ChIP-seq
70
DNase-seq
24
total RNA-seq
12
ATAC-seq
9
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
1
WGBS
Assay category
301
DNA binding
84
DNA accessibility
31
Transcription
9
3D chromatin structure
3
DNA methylation
Target of assay
251
histone
251
histone modification
138
narrow histone mark
113
broad histone mark
50
control
3
RNA binding protein
3
transcription factor
Date released
176
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
23
July, 2019
16
October, 2017
15
February, 2020
6
February, 2021
3
March, 2020
2
November, 2018
1
February, 2023
Available data
377
bam
328
bigWig
308
bed narrowPeak
224
bigBed narrowPeak
118
tagAlign
87
bed broadPeak
78
bigBed broadPeak
73
bed bed3+
33
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
430
Homo sapiens
Biosample type
387
tissue
43
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
430
AMP
Genome assembly (visualization)
325
GRCh38
277
hg19
Lab
430
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
organ_slims!
small intestine
BIOSAMPLE
ASSAY
430 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
WGBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
muscle of leg
7
13
1
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primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
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