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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ChIP-seq
5
RRBS
5
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
8
Transcription
5
DNA binding
5
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Target of assay
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
7
August, 2017
5
July, 2019
5
March, 2020
3
June, 2019
2
May, 2022
1
February, 2020
1
January, 2018
Available data
9
bam
8
bigWig
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
bed broadPeak
1
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
txt
Organism
24
Homo sapiens
Biosample type
18
tissue
6
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
14
hg19
7
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
small intestine
limb
target.investigated_as!
histone
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
3
4
1
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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