Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
38
DNase-seq
8
ATAC-seq
7
total RNA-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
62
DNA binding
47
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
narrow histone mark
19
control
Date released
71
October, 2019
32
June, 2019
6
February, 2021
5
July, 2019
5
May, 2019
3
February, 2020
1
March, 2020
Available data
114
bam
87
bigWig
86
bed narrowPeak
78
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
123
Homo sapiens
Biosample type
107
tissue
16
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
Genome assembly (visualization)
94
hg19
90
GRCh38
Lab
123
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
small intestine
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
123 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
27
2
1
5
tibial artery
19
2
1
1
muscle of leg
5
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 8 more…
primary cell
endothelial cell of umbilical vein
11
2
2
1
See all biosamples
Download