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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
Assay category
127
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
81
November, 2017
16
November, 2018
14
October, 2019
10
November, 2019
3
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
125
bigWig
124
bam
123
bed narrowPeak
101
bigBed narrowPeak
98
fastq
14
bed broadPeak
14
bigBed broadPeak
11
tagAlign
Organism
127
Homo sapiens
Biosample type
628
tissue
237
primary cell
127
cell line
112
in vitro differentiated cells
2
stem cell
Organ
100
liver
19
pancreas
12
epithelium
7
kidney
1
blood
1
bodily fluid
Project
125
AMP
2
T1D
Genome assembly (visualization)
122
hg19
120
GRCh38
Lab
124
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
19
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
12
inconsistent control read length
organ_slims!
small intestine
BIOSAMPLE
ASSAY
127 results
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ChIP-seq
cell line
HepG2
100
EndoC_BH1
12
Panc1
7
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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