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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
933
total RNA-seq
223
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
49
ATAC-seq
28
snATAC-seq
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1123
Transcription
223
DNA binding
78
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
120
control
104
histone
104
histone modification
56
narrow histone mark
48
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
537
February, 2021
166
May, 2020
165
August, 2021
118
July, 2018
91
October, 2019
89
August, 2017
70
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
24
February, 2020
24
November, 2017
22
May, 2019
22
May, 2022
20
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
October, 2018
1
August, 2022
Available data
1907
bam
1772
bigWig
1075
tsv
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1582
Homo sapiens
Biosample type
1584
tissue
473
primary cell
214
in vitro differentiated cells
178
cell line
6
stem cell
Organ
500
connective tissue
441
adipose tissue
246
pancreas
226
liver
150
bone element
146
kidney
140
heart
69
brain
33
blood vessel
33
vasculature
30
limb
29
musculature of body
26
eye
20
lung
16
nerve
11
artery
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1489
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
853
hg19
845
GRCh38
Lab
1382
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
28
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
organ_slims!
spinal cord
files.file_type!
bed narrowPeak
fastq
BIOSAMPLE
ASSAY
1584 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
2
1
islet of Langerhans
195
35
29
7
4
3
1
4
liver
167
46
1
1
2
1
1
kidney
49
7
64
11
6
1
1
bone element
84
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