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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
956
total RNA-seq
880
ChIP-seq
179
ATAC-seq
110
DNase-seq
110
single cell RNA-seq
85
RNA microarray
25
pCHi-C
22
snATAC-seq
15
WGBS
11
Hi-C
5
RRBS
4
MeRIP-seq
2
FAIRE-seq
Assay category
1066
Transcription
880
DNA binding
313
DNA accessibility
20
DNA methylation
11
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
284
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
July, 2019
66
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1748
bam
1621
bigWig
1018
tsv
825
bed narrowPeak
473
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
95
txt
11
bed bedMethyl
11
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2395
Homo sapiens
Biosample type
2404
tissue
1028
primary cell
643
cell line
394
in vitro differentiated cells
10
stem cell
Organ
537
connective tissue
499
pancreas
478
adipose tissue
353
liver
kidney
293
heart
254
brain
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
2354
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1635
GRCh38
1607
hg19
Lab
2241
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
spinal cord
kidney
month_released!
July, 2019
BIOSAMPLE
ASSAY
2404 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
298
71
68
1
4
7
3
4
1
adipose tissue
382
2
3
1
3
liver
165
145
20
2
1
1
3
1
1
bone element
84
heart left ventricle
1
35
3
18
1
1
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