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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
10
MeRIP-seq
6
WGBS
4
ATAC-seq
3
snDrop-seq
1
pCHi-C
Assay category
31
DNA accessibility
18
Transcription
6
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
24
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
563
tsv
556
bigWig
89
txt
45
fastq
25
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
3
bed bed3+
2
bed bed3
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
153
Homo sapiens
Biosample type
97
tissue
45
primary cell
7
cell line
4
in vitro differentiated cells
Organ
84
bone element
16
pancreas
12
epithelium
8
kidney
4
connective tissue
2
liver
Project
108
AMP
45
HPAP
Genome assembly (visualization)
5
hg19
Lab
98
AMP-T2D consortium
45
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
90
inconsistent ontology term
32
audit script error
organ_slims!
spinal cord
files.file_type!
bam
BIOSAMPLE
ASSAY
153 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
MeRIP-seq
WGBS
ATAC-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
islet of Langerhans
4
kidney (Cortex-Medulla)
1
kidney (cortex)
1
+ See 2 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
cell line
EndoC_BH1
6
HepG2
1
in vitro differentiated cells
adipocyte
4
See all biosamples
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