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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
523
total RNA-seq
84
RNA microarray
18
ATAC-seq
8
ChIP-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
529
Transcription
18
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
644
February, 2021
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
176
May, 2022
120
May, 2019
118
July, 2018
113
February, 2023
110
August, 2017
108
July, 2019
82
November, 2017
80
April, 2019
56
March, 2020
56
November, 2019
47
September, 2023
40
May, 2024
24
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
8
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
550
bam
537
tsv
529
bigWig
89
txt
fastq
23
bed narrowPeak
8
tagAlign
6
csv
2
bed bed3
2
bed bed3+
Organism
644
Homo sapiens
Biosample type
545
tissue
96
cell line
in vitro differentiated cells
3
primary cell
Organ
447
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
644
AMP
Genome assembly (visualization)
548
hg19
546
GRCh38
Lab
644
AMP-T2D consortium
Audit category:
110
inconsistent ontology term
5
audit script error
1
inconsistent replicate
organ_slims!
spinal cord
files.file_type!
fastq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
644 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
osteoblast
1
1
1
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