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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
315
DNA binding
1
DNA accessibility
1
Transcription
Target of assay
241
transcription factor
66
recombinant protein
56
control
34
RNA binding protein
15
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
315
bam
315
fastq
268
bigWig
250
bed narrowPeak
249
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
csv
Organism
318
Homo sapiens
Biosample type
317
cell line
1
tissue
Organ
455
connective tissue
386
adipose tissue
318
liver
150
bone element
91
brain
72
vasculature
69
blood vessel
66
artery
66
heart
38
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
Project
318
AMP
Genome assembly (visualization)
268
hg19
218
GRCh38
Lab
318
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
318 results
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ChIP-seq
ATAC-seq
pCHi-C
single cell RNA-seq
cell line
HepG2
315
1
1
tissue
liver
1
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