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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
546
ChIP-seq
251
total RNA-seq
84
RNA microarray
35
ATAC-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
546
DNA binding
255
Transcription
36
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
152
February, 2021
63
December, 2017
51
August, 2017
50
November, 2018
40
May, 2022
32
August, 2021
9
July, 2019
8
February, 2023
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
1
December, 2018
1
February, 2020
1
May, 2021
Available data
747
bam
680
bigWig
465
fastq
449
bed narrowPeak
358
bigBed narrowPeak
232
tsv
88
txt
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
5
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
937
Homo sapiens
Biosample type
513
tissue
400
cell line
15
in vitro differentiated cells
9
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
936
AMP
1
T1D
Genome assembly (visualization)
682
hg19
586
GRCh38
Lab
865
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
spinal cord
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
937 results
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ChIP-seq
total RNA-seq
RNA microarray
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
142
167
20
3
1
1
1
1
1
bone element
84
bone tissue
58
right lobe of liver
10
3
1
1
2
1
acetabular part of hip bone
1
1
+ See 11 more…
cell line
HepG2
378
14
1
1
2
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
5
1
Liver fetal (hepatocyte)
1
megakaryocyte
1
See all biosamples
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