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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
10
total RNA-seq
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
14
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
27
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
29
Homo sapiens
Biosample type
25
cell line
4
tissue
Organ
25
liver
4
pancreas
Project
29
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
3585
AMP-T2D consortium
335
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
29
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
organ_slims!
spinal cord
target.investigated_as!
control
assay_title!
STARR-seq
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
14
9
1
1
tissue
islet of Langerhans
1
2
1
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