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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
ATAC-seq
130
DNase-seq
78
snATAC-seq
4
FAIRE-seq
Assay category
1793
Transcription
1759
DNA binding
667
DNA accessibility
91
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
109
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
49
February, 2021
34
May, 2021
30
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
12
August, 2021
11
August, 2017
10
April, 2020
9
November, 2018
7
August, 2020
7
July, 2019
7
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
346
bed narrowPeak
307
bam
268
bigWig
160
bigBed narrowPeak
130
bed bed3+
129
bed broadPeak
127
bigBed broadPeak
100
fastq
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
666
Homo sapiens
Biosample type
318
tissue
276
primary cell
43
in vitro differentiated cells
30
cell line
Organ
173
pancreas
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
spleen
1
pituitary gland
1
skin of body
Project
531
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
378
hg19
285
GRCh38
Lab
478
AMP-T2D consortium
97
Klaus Kaestner, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
29
audit script error
1
inconsistent replicate
organ_slims!
spleen
kidney
BIOSAMPLE
ASSAY
667 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
retina
15
3
+ See 50 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 50 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
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