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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ATAC-seq
109
DNase-seq
22
snATAC-seq
3
FAIRE-seq
Assay category
1112
Transcription
860
DNA binding
318
DNA accessibility
35
DNA methylation
15
3D chromatin structure
Date released
95
June, 2019
81
February, 2023
39
May, 2022
20
November, 2019
20
October, 2019
10
April, 2020
9
November, 2018
8
February, 2021
8
January, 2021
7
July, 2019
7
October, 2017
5
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
254
bed narrowPeak
174
bam
153
bigWig
114
bigBed narrowPeak
109
bed broadPeak
108
bed bed3+
107
bigBed broadPeak
39
fastq
5
bed bed3
1
tsv
1
txt
Organism
317
Homo sapiens
Biosample type
318
tissue
276
primary cell
43
in vitro differentiated cells
30
cell line
Organ
kidney
82
pancreas
66
heart
44
limb
43
blood vessel
43
vasculature
41
artery
34
musculature of body
32
brain
31
eye
25
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
8
adipose tissue
8
connective tissue
3
nerve
spleen
1
pituitary gland
1
skin of body
Project
287
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
218
hg19
190
GRCh38
Lab
244
AMP-T2D consortium
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
organ_slims!
spleen
kidney
BIOSAMPLE
ASSAY
318 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
retina
15
3
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