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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
558
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
73
WGBS
52
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
83
DNA accessibility
1
DNA sequencing
Date released
27
February, 2021
21
May, 2022
16
January, 2021
10
April, 2020
7
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
vcf
Organism
83
Homo sapiens
Biosample type
56
primary cell
27
tissue
1
cell line
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
1
liver
Project
48
HPAP
18
T1D
10
LungMap
8
AMP
Genome assembly (visualization)
hg19
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
28
audit script error
organ_slims!
spleen
assembly!
hg19
BIOSAMPLE
ASSAY
84 results
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snATAC-seq
whole genome sequencing assay
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
cell line
HepG2
1
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