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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1851
ChIP-seq
1527
total RNA-seq
530
ATAC-seq
369
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
94
DNA methylation
1
DNA sequencing
Date released
41
May, 2022
27
July, 2019
15
August, 2017
6
February, 2021
5
November, 2018
1
August, 2021
Available data
41
zippedFastqFolder
34
bed bedMethyl
34
bigBed bedMethyl
19
fastq
16
bam
15
bigWig
6
tsv
1
vcf
Organism
95
Homo sapiens
Biosample type
57
primary cell
36
tissue
2
cell line
Organ
53
epithelium
53
pancreas
10
heart
8
liver
7
connective tissue
6
adipose tissue
6
musculature of body
4
kidney
3
vasculature
2
blood vessel
2
brain
spleen
1
eye
1
limb
1
pericardium
Project
48
AMP
47
HPAP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
47
AMP-T2D consortium
47
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
spleen
BIOSAMPLE
ASSAY
95 results
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WGBS
RRBS
whole genome sequencing assay
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 7 more…
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
+ See 12 more…
cell line
HepG2
1
1
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