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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
53
total RNA-seq
41
WGBS
28
ChIP-seq
8
DNase-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
73
DNA accessibility
53
Transcription
41
DNA methylation
28
DNA binding
Target of assay
28
control
3
histone
3
histone modification
3
nucleotide modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
38
February, 2023
19
September, 2020
17
May, 2021
12
August, 2017
8
June, 2019
8
October, 2019
7
August, 2020
6
November, 2020
3
August, 2021
3
December, 2017
2
November, 2019
1
May, 2019
Available data
84
fastq
80
zippedFastqFolder
34
bam
16
bigWig
tsv
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
2
tagAlign
Organism
203
Homo sapiens
Biosample type
173
primary cell
27
cell line
4
in vitro differentiated cells
Organ
279
pancreas
213
kidney
204
epithelium
154
liver
108
brain
107
heart
91
connective tissue
89
bone element
62
adipose tissue
61
blood vessel
61
vasculature
44
artery
23
limb
22
eye
20
musculature of body
19
lung
14
blood
14
bodily fluid
11
nerve
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
thymus
Project
143
HPAP
61
AMP
Genome assembly (visualization)
hg19
148
GRCh38
Lab
143
Klaus Kaestner, Upenn
55
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
30
inconsistent ontology term
organ_slims!
spleen
assembly!
hg19
files.file_type!
tsv
BIOSAMPLE
ASSAY
204 results
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ATAC-seq
total RNA-seq
WGBS
ChIP-seq
DNase-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
42
25
6
pancreatic beta cell
16
11
16
6
endothelial cell of umbilical vein
5
pancreatic acinar cell
4
kidney tubule cell
3
+ See 7 more…
cell line
EndoC_BH1
16
2
6
2
1
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
See all biosamples
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