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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
RRBS
15
WGBS
Assay category
32
DNA methylation
Date released
21
July, 2019
6
August, 2017
5
November, 2018
Available data
3156
bam
2921
bigWig
1700
bed narrowPeak
1449
tsv
1323
fastq
1005
bigBed narrowPeak
395
tagAlign
317
bed broadPeak
280
bigBed broadPeak
266
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
32
Homo sapiens
Biosample type
23
tissue
8
primary cell
1
cell line
Organ
7
heart
6
pancreas
5
epithelium
4
musculature of body
3
kidney
3
liver
2
adipose tissue
2
brain
2
connective tissue
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
32
AMP
Genome assembly (visualization)
17
hg19
15
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
spleen
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
32 results
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RRBS
WGBS
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 10 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
kidney epithelial cell
1
renal cortical epithelial cell
1
+ See 3 more…
cell line
HepG2
1
See all biosamples
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