Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
77
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
190
Transcription
100
DNA accessibility
77
DNA binding
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
25
transcription factor
23
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
310
bam
287
bigWig
189
tsv
54
bed narrowPeak
50
tagAlign
28
fastq
27
bigBed narrowPeak
Organism
369
Homo sapiens
Biosample type
193
tissue
147
primary cell
29
cell line
Organ
195
liver
27
blood
27
bodily fluid
spleen
Project
324
AMP
45
T1D
Genome assembly (visualization)
287
hg19
234
GRCh38
Lab
324
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
organ_slims!
spleen
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
369 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
tissue
liver
143
50
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
GM12878
27
HepG2
1
1
See all biosamples
Download