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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
981
total RNA-seq
786
ChIP-seq
184
ATAC-seq
116
single cell RNA-seq
109
DNase-seq
85
RNA microarray
25
WGBS
24
pCHi-C
22
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1112
Transcription
786
DNA binding
318
DNA accessibility
35
DNA methylation
15
3D chromatin structure
Target of assay
572
histone modification
571
histone
301
narrow histone mark
270
broad histone mark
144
control
72
transcription factor
16
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
284
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
October, 2018
73
July, 2019
66
May, 2022
57
April, 2019
48
December, 2017
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
25
February, 2020
22
October, 2017
19
April, 2020
17
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1711
bam
1620
bigWig
1063
tsv
772
bed narrowPeak
416
bigBed narrowPeak
295
fastq
238
tagAlign
144
bed broadPeak
136
bed bed3+
107
bigBed broadPeak
95
txt
22
bed bedMethyl
22
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2370
Homo sapiens
Biosample type
2379
tissue
1050
primary cell
643
cell line
394
in vitro differentiated cells
10
stem cell
Organ
524
connective tissue
465
adipose tissue
454
pancreas
361
liver
313
heart
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2329
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1633
GRCh38
1604
hg19
Lab
2216
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
spleen
kidney
month_released!
October, 2018
BIOSAMPLE
ASSAY
2379 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
292
71
68
6
1
4
7
3
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
4
1
1
1
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