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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
144
ChIP-seq
8
DNase-seq
5
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
144
DNA binding
9
DNA accessibility
5
DNA methylation
1
Transcription
Target of assay
67
transcription factor
60
histone
60
histone modification
37
broad histone mark
25
RNA binding protein
23
narrow histone mark
17
control
16
recombinant protein
7
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
157
bam
139
bigWig
134
bed narrowPeak
133
bigBed narrowPeak
79
fastq
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
csv
Organism
159
Homo sapiens
Biosample type
97
tissue
61
cell line
1
primary cell
Organ
57
heart
53
liver
23
kidney
15
blood
15
bodily fluid
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
159
AMP
Genome assembly (visualization)
137
GRCh38
132
hg19
Lab
159
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
spleen
BIOSAMPLE
ASSAY
159 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
liver
4
2
+ See 5 more…
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic cell
1
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